Examples of Encode in a sentence
GENCODE: the reference human genome annotation for The ENCODE Project.
Identification of higher-order functional domains in the human ENCODE regions.
Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions.
Comparisons were made using standard ENCODE replicate comparison parameters (the top 40% of each list of peaks for a given false discovery rate (Q-value) were compared to the entire list peaks obtained with the other antibody and the reciprocal comparison was also made).
Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions.
Given that the main purpose of the package is to fa- cilitate playing, experimenting and learning about Rexx and Unicode, this suggestion looked more than idoneous.Version 0.3 was released on August 11.8 It featured Unicode support forthe stream bifs, two new bifs, ENCODE() and DECODE(), and new documen- tation in ooRexxDoc format (we have since migrated to GitHub Markdown).
Numbers of tag SNPs selected in CEU ENCODE regionLRTag 119LRTag 148LRTag 192 Hao [4] mentioned two different methods to implement his greedy algorithm and handle a large number of input SNPs: (1) Preprocess and compute all r2 values, and (2) Calculate r2 values on the fly while selecting tag SNPs. The former method would lead to heavy memory load and/or file I/O load.
This cell line was chosen because it had the most available TF ChIP-seq data available on ENCODE at the time.
The DART classification of unannotated transcription within ENCODE regions: Associating transcription with known and novel loci.
Novel quality control assessments for RNA-seq have also 28 been developed or adapted such as the irreproducible discovery rate (IDR), initially 29 developed for CHIP-seq data [16], and then applied by ENCODE to RNA-seq data 30 [17].