Annotations. Five patient EHR notes were annotated for each of the three rounds. The annotation of EHR clinical notes for research purposes was approved by the Institutional Review Board of the University of Illinois. Informed patient consent for use of clinical notes was obtained from all subjects through the UIC Biobank Project. Three human annotators (A1, A2, and A3) and the machine annotator (NN) annotated each note. After each round, the annotators met and reviewed any annotation disagreements. EHR notes varied in length. The number of concepts to annotate for Round 1 was 117, for Round 2 was 129, and for Round 3 was 114. The annotations of each annotator were stored in an SQLite database and exported as a JSON file for scoring for inter-rater agreement in python. Text spans were mapped to concepts in the neuro-ontology [16] utilizing a lookup table with 3,500 target phrases and the similarity method from spaCy [2] (pp. 152-154). Univariate analysis of variance and ▇▇▇▇▇’▇ kappa statistics were calculated with SPSS (IBM, version 28).
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Sources: Inter Rater Agreement, Inter Rater Agreement