Exelixis, Inc. Sample Contracts

RECITALS
Stock Purchase Agreement • August 27th, 2001 • Exelixis Inc • Services-commercial physical & biological research • Delaware
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EXHIBIT 1.1 Exelixis, Inc. Common Stock Underwriting Agreement ----------------------
Underwriting Agreement • February 18th, 2000 • Exelixis Inc • Services-commercial physical & biological research • New York
EXHIBIT 10.16 ASSET PURCHASE AGREEMENT
Asset Purchase Agreement • February 7th, 2000 • Exelixis Inc • California
EXELIXIS, INC., as Issuer AND WELLS FARGO BANK, NATIONAL ASSOCIATION, as Trustee INDENTURE Dated as of August 14, 2012 Debt Securities
Indenture • August 14th, 2012 • Exelixis Inc • Services-commercial physical & biological research • New York

INDENTURE, dated as of August 14, 2012, among Exelixis, Inc., a Delaware corporation (the “Company”), and Wells Fargo Bank, National Association, a national banking association, as trustee (the “Trustee”):

EXELIXIS, INC. AND , AS WARRANT AGENT PREFERRED STOCK WARRANT AGREEMENT DATED AS OF
Warrant Agreement • June 8th, 2012 • Exelixis Inc • Services-commercial physical & biological research • New York

THIS PREFERRED STOCK WARRANT AGREEMENT (this “Agreement”), dated as of [•], between EXELIXIS, INC., a Delaware corporation (the “Company”) and [•], a [corporation] [national banking association] organized and existing under the laws of [•] and having a corporate trust office in [•], as warrant agent (the “Warrant Agent”).

Exelixis, Inc. Common Stock Underwriting Agreement
Underwriting Agreement • August 14th, 2012 • Exelixis Inc • Services-commercial physical & biological research • New York

Exelixis, Inc., a Delaware corporation (the “Company”), proposes, subject to the terms and conditions stated herein, to issue and sell to the Underwriters named in Schedule I hereto (the “Underwriters”) an aggregate of 30,000,000 shares (the “Firm Shares”) and, at the election of the Underwriters, up to 4,500,000 additional shares (the “Optional Shares”) of Common Stock, par value $0.001 per share (the “Stock”) of the Company (the Firm Shares and the Optional Shares that the Underwriters elect to purchase pursuant to Section 2 hereof being collectively called the “Shares”).

EXELIXIS, INC. and , AS WARRANT AGENT FORM OF COMMON STOCK WARRANT AGREEMENT DATED AS OF
Common Stock Warrant Agreement • April 24th, 2009 • Exelixis Inc • Services-commercial physical & biological research • New York

COMMON STOCK WARRANT AGREEMENT (this “Agreement”), dated as of between Exelixis Inc., a Delaware corporation (the “Company”) and , a [corporation] [national banking association] organized and existing under the laws of and having a corporate trust office in , as warrant agent (the “Warrant Agent”).

EXELIXIS, INC. AND , AS WARRANT AGENT DEBT SECURITIES WARRANT AGREEMENT DATED AS OF
Warrant Agreement • June 8th, 2012 • Exelixis Inc • Services-commercial physical & biological research • New York

THIS DEBT SECURITIES WARRANT AGREEMENT (this “Agreement”), dated as of [•], between EXELIXIS, INC., a Delaware corporation (the “Company”) and [•], a [corporation] [national banking association] organized and existing under the laws of [•] and having a corporate trust office in [•], as warrant agent (the “Warrant Agent”).

AGREEMENT OF MERGER
Agreement of Merger • August 6th, 2002 • Exelixis Inc • Services-commercial physical & biological research
AUTOMATIC DATA PROCESSING NON-STANDARDIZED 401(K) PROFIT SHARING PLAN AND TRUST
Adoption Agreement • February 14th, 2002 • Exelixis Inc • Services-commercial physical & biological research
EXELIXIS, INC. AND , AS WARRANT AGENT FORM OF PREFERRED STOCK WARRANT AGREEMENT DATED AS OF
Preferred Stock Warrant Agreement • October 27th, 2004 • Exelixis Inc • Services-commercial physical & biological research • New York

PREFERRED STOCK WARRANT AGREEMENT, dated as of between EXELIXIS, INC., a Delaware corporation (the “COMPANY”) and , a [corporation] [national banking association] organized and existing under the laws of and having a corporate trust office in , as warrant agent (the “WARRANT AGENT”).

Exelixis, Inc. Underwriting Agreement
Underwriting Agreement • August 14th, 2012 • Exelixis Inc • Services-commercial physical & biological research • New York

Exelixis, Inc., a Delaware corporation (the “Company”), proposes, subject to the terms and conditions stated herein, to issue and sell to the Underwriters named in Schedule I hereto (the “Underwriters”) an aggregate of $250,000,000 principal amount of the 4.25% Convertible Senior Subordinated Notes due 2019 (the “Firm Securities”), convertible into shares of common stock of the Company, par value $0.001 per share (“Stock”), and, at the election of the Underwriters, up to an aggregate of $37,500,000 additional principal amount of 4.25% Convertible Senior Subordinated Notes due 2019 (the “Optional Securities”) (the Firm Securities and the Optional Securities that the Underwriters elect to purchase pursuant to Section 2 hereof being collectively called the “Securities”).

SUBLEASE
Sublease • May 13th, 2002 • Exelixis Inc • Services-commercial physical & biological research
EXELIXIS, INC. and , AS WARRANT AGENT FORM OF DEBT SECURITIES WARRANT AGREEMENT DATED AS OF
Debt Securities Warrant Agreement • April 24th, 2009 • Exelixis Inc • Services-commercial physical & biological research • New York

DEBT SECURITIES WARRANT AGREEMENT (this “Agreement”), dated as of between Exelixis, Inc., a Delaware corporation (the “Company”) and , a [corporation] [national banking association] organized and existing under the laws of and having a corporate trust office in , as warrant agent (the “Warrant Agent”).

RECITALS
Cooperation Agreement • February 7th, 2000 • Exelixis Inc • New York
EXELIXIS, INC. AND , AS WARRANT AGENT FORM OF DEBT SECURITIES WARRANT AGREEMENT DATED AS OF
Securities Warrant Agreement • October 27th, 2004 • Exelixis Inc • Services-commercial physical & biological research • New York

DEBT SECURITIES WARRANT AGREEMENT, dated as of , between EXELIXIS, INC., a Delaware corporation (the “COMPANY”) and , a [corporation] [national banking association] organized and existing under the laws of and having a corporate trust office in , as warrant agent (the “WARRANT AGENT”).

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EXHIBIT 10.34 LOAN AND SECURITY AGREEMENT Exelixis, Inc. TABLE OF CONTENTS -------------------
Loan and Security Agreement • August 6th, 2002 • Exelixis Inc • Services-commercial physical & biological research
RECITALS
Collaboration Agreement • September 17th, 2001 • Exelixis Inc • Services-commercial physical & biological research • California
REGISTRATION RIGHTS AGREEMENT
Registration Rights Agreement • January 22nd, 2014 • Exelixis, Inc. • Services-commercial physical & biological research • New York

REGISTRATION RIGHTS AGREEMENT (this “Agreement”), dated as of January 22, 2014, by and between EXELIXIS, INC., a Delaware corporation (the “Company”), and Deerfield Partners, L.P., Delaware limited partnership, and Deerfield International Master Fund, L.P., a limited partnership organized under the laws of the British Virgin Islands (individually, a “Lender” and together, the “Lenders”).

Underwriting Agreement
Underwriting Agreement • June 23rd, 2003 • Exelixis Inc • Services-commercial physical & biological research • New York

Company’s Annual Report on Form 10-K for the most recent fiscal year agrees with the corresponding amounts (after restatement where applicable) in the audited consolidated financial statements for such five fiscal years which were included or incorporated by reference in the Company’s Annual Reports on Form 10-K for such fiscal years;

EXELIXIS, INC. Stock Option Agreement (Incentive and Nonstatutory Stock Options)
Stock Option Agreement • November 8th, 2004 • Exelixis Inc • Services-commercial physical & biological research

Pursuant to your stock option grant as evidenced by the Certificate of Stock Option Grant on the Smith Barney Stock Plan Services website (“the Grant Certificate”) and this Stock Option Agreement, Exelixis, Inc. (the “Company”) has granted you an option under its 2000 Equity Incentive Plan (the “Plan”) to purchase the number of shares of the Company’s Common Stock indicated in your Grant Certificate at the exercise price indicated in your Grant Certificate. Defined terms not explicitly defined in this Stock Option Agreement but defined in the Plan shall have the same definitions as in the Plan.

EXELIXIS, INC. Option Agreement (Incentive Stock Option or Nonstatutory Stock Option)
Option Agreement • February 11th, 2021 • Exelixis, Inc. • Biological products, (no disgnostic substances) • California

Pursuant to your Notice of Grant of Stock Option (“Grant Notice”) and this Option Agreement and in consideration of your services, Exelixis, Inc. (the “Company”) has granted you an option under its 2017 Equity Incentive Plan (the “Plan”) to purchase the number of shares of the Company’s Common Stock indicated in your Grant Notice at the exercise price indicated in your Grant Notice. Your option is granted to you effective as of the Date of Grant set forth in the Grant Notice. This Option Agreement shall be deemed to be agreed to by the Company and you upon the signing or electronically accepting by you of the Grant Notice to which it is attached. Capitalized terms not explicitly defined in this Option Agreement shall have the same meanings given to them in the Plan. In the event of any conflict between the terms in this Option Agreement and the Plan, the terms of the Plan shall control. The details of your option, in addition to those set forth in the Grant Notice and the Plan, are as

EXELIXIS, INC. 2017 EQUITY INCENTIVE PLAN RESTRICTED STOCK UNIT AGREEMENT (NON- EMPLOYEE DIRECTORS)
Equity Incentive Plan Restricted Stock Unit Agreement • August 6th, 2020 • Exelixis, Inc. • Services-commercial physical & biological research • California

Pursuant to the Restricted Stock Unit Grant Notice (“Grant Notice”) and this Restricted Stock Unit Agreement (Non-Employee Directors) and in consideration of your services, Exelixis, Inc. (the “Company”) has awarded you a Restricted Stock Unit Award (the “Award”) under its 2017 Equity Incentive Plan (the “Plan”). Your Award is granted to you effective as of the Date of Grant set forth in the Grant Notice for this Award. This Restricted Stock Unit Agreement shall be deemed to be agreed to by the Company and you upon the signing or electronically accepting by you of the Restricted Stock Unit Grant Notice to which it is attached. Capitalized terms not explicitly defined in this Restricted Stock Unit Agreement shall have the same meanings given to them in the Plan. In the event of any conflict between the terms in this Restricted Stock Unit Agreement and the Plan, the terms of the Plan shall control. The details of your Award, in addition to those set forth in the Grant Notice and the Plan

WATERFRONT AT HARBOR BAY ALAMEDA, CA LEASE AGREEMENT between ASCENTRIS 105, LLC, as Landlord, and EXELIXIS, INC., as Tenant
Lease Agreement • August 2nd, 2017 • Exelixis, Inc. • Services-commercial physical & biological research • California
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